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pylazybam 0.1.0 documentation
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C
close() (pylazybam.bam.FileReader method)
(pylazybam.bam.FileWriter method)
D
decode_base_qual() (in module pylazybam.decoders)
decode_cigar() (in module pylazybam.decoders)
decode_sequence() (in module pylazybam.decoders)
F
FileReader (class in pylazybam.bam)
FileWriter (class in pylazybam.bam)
G
get_AS() (in module pylazybam.tags)
get_bin() (in module pylazybam.bam)
get_flag() (in module pylazybam.bam)
get_full_raw_header() (pylazybam.bam.FileReader method)
(pylazybam.bam.FileWriter method)
get_int_tag() (in module pylazybam.tags)
get_len_read_name() (in module pylazybam.bam)
get_len_sequence() (in module pylazybam.bam)
get_mapq() (in module pylazybam.bam)
get_MD() (in module pylazybam.tags)
get_number_cigar_operations() (in module pylazybam.bam)
get_pair_pos() (in module pylazybam.bam)
get_pair_ref_index() (in module pylazybam.bam)
get_pos() (in module pylazybam.bam)
get_raw_base_qual() (in module pylazybam.bam)
get_raw_cigar() (in module pylazybam.bam)
get_raw_read_name() (in module pylazybam.bam)
get_raw_sequence() (in module pylazybam.bam)
get_read_name() (in module pylazybam.bam)
get_ref_index() (in module pylazybam.bam)
get_str_tag() (in module pylazybam.tags)
get_tag_bytestring() (in module pylazybam.bam)
get_template_len() (in module pylazybam.bam)
get_updated_header() (pylazybam.bam.FileReader method)
(pylazybam.bam.FileWriter method)
get_XS() (in module pylazybam.tags)
get_ZS() (in module pylazybam.tags)
H
header (pylazybam.bam.FileReader attribute)
I
index_to_ref (pylazybam.bam.FileReader attribute)
is_flag() (in module pylazybam.decoders)
P
pylazybam.bam (module)
pylazybam.decoders (module)
pylazybam.tags (module)
R
raw_header (pylazybam.bam.FileReader attribute)
raw_refs (pylazybam.bam.FileReader attribute)
ref_to_index (pylazybam.bam.FileReader attribute)
refs (pylazybam.bam.FileReader attribute)
reset_alignments() (pylazybam.bam.FileReader method)
S
seekable() (pylazybam.bam.FileWriter method)
sort_order (pylazybam.bam.FileReader attribute)
T
tell() (pylazybam.bam.FileWriter method)
U
update_header() (pylazybam.bam.FileReader method)
(pylazybam.bam.FileWriter method)
update_header_length() (pylazybam.bam.FileReader method)
(pylazybam.bam.FileWriter method)
W
write() (pylazybam.bam.FileWriter method)
write_header() (pylazybam.bam.FileWriter method)
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